Friday, July 29, 2022

PHAGE LYSINS

Viruses that specifically infect bacteria are called bacteriophage or phage. After replicating inside the bacterial cells, phages needs to efficiently exit the bacterium to disseminate its progeny to begin a new cycle. For this purpose, double stranded deoxyribonucleic acid phages have evolved a lytic system to weaken the bacterial cell wall resulting in hypotonic bacterial lysis or lysis from within.

Phage lytic enzymes or lysins are highly efficient molecules to release it progeny phage. These enzymes target the integrity of the cell wall, and are designed to attack one of the five major bonds in the peptidoglycan. The lysins acts along with a translocase system called holin. The holin molecules are inserted in the cytoplasmic membrane forming patches, resulting in a hole through which the lysins access the peptidoglycan to cleave the specific bonds, thereby causing immediate cell lysis and release of progeny phage. 

Structure of lysins (Endolysins)

Lysins consists of two separate functional domains , one is enzymatically catalytic domain (EAD) which is N-terminal and the second is the C-terminal cell wall binding domain (CBD). EAD is responsible for for the catalytic activity and works by cleaving various bonds in the peptidoglycan, where as the CBD recognizes and specifically binds to its target bacterial cell wall receptors. Gram positive and Gram negative lysins are structurally different. Unlike Gran positive lysins that exhibit the classical structure with both the domains, Gram negative lysins only possesses EADs , they mostly lack a modular structure.

 Mechanism of action

Several types of EADs are identified which works at different sites in the peptidoglycan layer. N-acetyl muramidases, N-acetylglucosaminidases and transglycosilases work on the sugar backbone of the peptidoglycan layer whereas the other class called endopeptidases attack on the peptide bonds of the cross-linking and interpeptide bridges, N-acetylmuramoyl-L-alanine amidases work by attacking the amide bond between N-acetylmuramic acid and L-alanine causing rapid cleavage. In addition, Lysin-Holin system seen in many Gram positive infecting phages that direct the lysins to gain easy access to the cell wall from within. Finally, the bacterial cell loses rigidity leading to cell lysis and death. 

These cell wall breaching enzymes represent a step ahead in the antibacterial campaign acting as active killing mechanisms with high specificity. Moreover, phage lysins are direct, kill instantly, lacking the issues of associated resistance with no off-target effects as peptidoglycan does not exist in mammalian tissue which is a clear advantage over antibiotics and chemical preservatives. Also the biodegradable nature of these enzymes fits perfectly into its application in/on food stuffs as well as use as therapeutics.  

Lysins as Antibacterial agents

Due to the emergence of antibiotic resistance in organisms, many infectious agents have become life threatening agents in humans. To overcome theses issues, research has focused on phage derived endolysins for both topical and systemic infections in humans.

One particular pathogen that has received significant focus is Staphylococcus aureus, due to its involvement in topical skin or tissue infections, as well as systemic blood poisoning, bone, and cardiac infections. Furthermore, the rise in multidrug resistant and methicillin resistant S. aureus (MRSA), has reduced the availability of effective antibiotics. Commercially available recombinant endolysins, Staphefekt SA.100, and XDR.300 have been implemented in patients with chronic skin disease caused by S. aureus. Another endolysin, CHAPk has the potential reduce S. aureus colonization in the skin.

In contrast, Gram negative pathogens such as Acinetobacter baumannii and Pseudomonas aeruginosa have considered major opportunistic pathogens in burn wounds. To treat such drug resistant pathogens, novel engineered endolysin named artilysins have been suggested.  

Use of lysins in veterinary medicine

Food animals such as cattle, poultry, and swine have been found to be a major reservoir of antibiotic resistant bacteria and its specific gene that can move to people directly or indirectly by the food chain. As a consequence, the use of antibiotics in animal feed has been banned in many countries. Therefore, there is significant need for antibiotic alternatives such as endolysins for veterinary use.

Endolysins have been recommended to treat most farm animal related pathogens such as Clostridium perfringens, Streptococcus suis, Paenibacillus larvae and Salomonella species. 

Examples include;

  • Endolysin phiSM101 against Clostridium perfringens
  • amidase endolysin, CP25L against Lactobacillus johnsonii
  • amidase endolysin PlyG against Bacillus anthracis
  • amidase endolysin PlyC Streptococcus equi
Use of lysins in Agriculture

The prevalence of antibiotic resistance in the food chain process within agriculture and crop culture has led to the cause of bacterial infection in humans. For example, Multidrug resistant leaf blight rice can cause nosocomial infections in immunocompromised individuals. Thus endolysin therapy has been suggested to ensure safety of plants. 

Examples include;

  • Transgenic tomato plant with CMP1 phage to prevent infection of Clavibacter michiganensis, responsible for canker.
  • Transgenic potato plant with T4 phage lysin to Erwinia carotovora. 
Use of lysins in food technology

Lysins can be safely used in the food industry as a potential alternative to the chemical preservatives and antibiotics. The advantages are;

  • Phages are ubiquitous in nature and are natural commensals in of humans and animal body. Their ubiquitous nature strongly support the fact that they are part of our foods and are completely safe and harmless entities.
  • High specificity in their action allows attacking target bacterial cells only while not affecting the normal microbial flora unlike most of the preservatives and antibiotics do.
  • Phage treatment of foods does not lead to any change in sensory, taste, organoleptic properties which may may discourage the final consumer acceptance.
Examples include;

  • LinM-Ag8- immobilized phage active against  growth of Listeria monocytogenes in cantaloupe and RTE meat
  • Team1, P68,LH1-MUT- phage cocktail eradicated S. aureus load after 14 days of cheddar cheese curd ripening at 4°C
  • SE07-pahge application bought significant reduction of Salmonella enteritidis population in fruit juice and fresh eggs, beef, and chicken meat samples after incubation at 4°C for 48 hour.

 Use of Endolysin in Biofilm eradication

Bacteria are universally found in nature attached to surfaces such as living tissues, medical devices, industrial equipment or food. During attachment some bacteria produce extracellular polymeric substances forming a complex cluster of bacterial cells, known as biofilm.    

In clinical and food settings, biofilms are major concerns as they form on critical locations causing contamination that affects the efficacy of the established procedures; for example, the bacterial colonization on the outer surfaces of catheters. Also they cause treatment failure in surgeries and chronic wounds due to antibiotic-resistant bacteria housed within the biofilm network.

Examples include;

  • endolysin LysPA26 to eliminate Psudomonas aeruginosa, Acinetobacter baumannii, Klebsiella pneumoniae and Escherichia coli  in the biofilm formation.
  • LySMP, to treat Streptococcus suis biofilm.

 

 


Tuesday, July 26, 2022

SCRUB TYPHUS

Scrub typhus (Tsutsugamushi fever or Chigger borne typhus) is a chigger-borne zoonosis caused by Orientia tsutsugamushi. Humans are accidental hosts who acquire the disease by intruding into often sharply localized foci colonized by infected larval trombiculid mites (chigger mites).

The family Rickettsiaeceae currently comprises of three genera-Rickettsia, Orientia and Ehrlichia. These organisms are primarily parasites of arthropods such as lice, fleas, ticks and mites. 

Causative agent

Orientia tsutsugamushi is an obligate intracellular parasite. The organism are rods approximately 0.5 µm in width and from 1.2 to 3.0 µm in length. It differs from other members of the family in its genetic make up and in the composition of its cell wall structure since it lacks lipopolysaccharides and peptidoglycan and does not have an outer slime layer. 

Orientia tsutsugamushi invade host cells by induced phagocytosis and escapes from the phagosome to the cytosol. Once free in the host cytoplasm, the bacteria replicate by transverse binary fission in the perinuclear area. Organisms are released from the cell by pushing out the host cytoplasmic membrane from inside, and budding organisms accumulate at high density on the host cell from infected cells. The organism enters the cytosol of the new cell by lysing intervening host cell membranes. Organisms stain deep purple by Giemsa and characteristically are grouped in perinuclear clusters. 

 Antigenic structure

The major surface protein antigen of Orientia tsutsugamushi is the variable 56-kDa protein, which accounts for 10 to 15 % of its total protein. This protein is an immunodominant antigen, is reactive with group and strain specific monoclonal antibodies, and is recognized by sera from most scrub typhus patients. The other major surface proteins are 110, 47 and 25 kDa. 

Habitat and Ecology

Transmission often occurs in zones where primary forest has been cleared and replaced by secondary, or scrub, vegetation, hence the name scrub typhus.  

Humans are accidental hosts, acquiring Orientia tsutsugamushi during feeding of a larval trombiculid mite of the genus Leptotrombidium. These chiggers only feed on mammalian tissue fluid once in their lifetime and constitute the reservoir of infection through transovarial transmission. Mites are normally maintained in nature by feeding on a variety of wild rodents. Rodents are the key to the population density of chiggers but are not a reservoir of Orientia tsutsugamushi. Only a low proportion of chiggers acquire Orientia tsutsugamushi acquire from infected rats, and chiggers infected by feeding neither develop a generalized infection or transmit the organisms transovarially to their offspring. 

Humans become infected when the accidentally encroach on a zone where the rodent-chigger cycle is taking place. Transmission depends on the seasonal activities of both chiggers and humans. Chigger activity is determined by temperature and humidity, both of which are relatively stable in tropics. In much of southeast Asia where climatic conditions are favorable throughout the year, populations of mites and maintaining rodent hosts may be high and endemic areas extensive. 

Leptotrombidium deliense is the most important vector species in Southeast Asia and Southern China, where as L. akamushi, L. scutellare and L. pallidum are the main vectors in Korea and Japan. 

Pathogenesis and pathology

Heparin sulfate proteoglycans contribute to the attachment of Orientia tsutsugamushi to cells, but a specific cellular receptor has not been identified. Scrub typhus bacteria have been demonstrated in a variety of cells in humans, including monocytes, macrophages, kuppfer cells, cardiac myocytes, hepatocytes and endothelial cells. 

In fatal cases, the histopathology is chiefly disseminated focal vasculitis and perivasculitis, particularly in vessels of the skin, lungs, heart, and brain. Endovasculitis and focal hemorrhage may be present but are less prominent than in Rocky Mountain spotted fever and epidemic typhus. Pathologic abnormalities often correlate poorly with the clinical picture. Several series report consistent vasculitic lesions in the kidney and heart, but neither primary myocarditis nor renal failure are often seen clinically. The basic histopathological lesions, disseminated perivasculitis, and focal interstitial mononuclear infiltrates associated with edema suggest that macrophages are a more important target cell than the endothelium. Thrombotic lesions are rare, and little histologically evident vascular damage was seen in the most important histopathologic study of Orientia tsutsugamushi infection. The most important lesions are interstitial pneumonia with alveolar edema, hemorrhage, occasionally hyaline membranes, interlobular septal edema, and meningoencephalitis.

Clinical features

The chigger bite can occur on any part of the body, is painless, and is not usually remembered by the patient. An eschar forms at the bite site in about half of primary infection and in a lesser proportion of secondary infections. However eschars are often located in hard to examine areas such as the genital region or under the axilla and are often missed. 

The eschar develops during the 6 to 20 day (average 10 days) incubation period and is usually well developed by the time fever appears. It begins as a small papule, enlarges, undergoes central necrosis, and acquires a blackened crust to form a lesion resembling a cigarette burn. Regional lymph node are enlarged and sometimes tender, and generalized lymphadenopathy and splenomegaly are not uncommon.

Fever and headache begin abruptly and are frequently accompanied by myalgias and malaise. Muscle tenderness is either absent or mild. A transient muscular rash may appear at the end of the first week of illness. The rash appears on the trunk, becomes maculopapular, and spreads peripherally. Hearing loss concurrent with the onset of fever occurs in about one-third of cases and is a very useful diagnostic clue. Acoustic nerve damage caused by scrub typhus has been well documented pathologically.

Cough, sometimes accompanied by infiltrates on the chest radiograph, is one of the most common presentations of scrub typhus infection. In severe cases, tachypnea progress to dyspnea, the patient become cyanotic, and full-blown ARDS may develop. Respiratory failure is the most common cause of death in severe scrub typhus infection.

Laboratory diagnosis

Diagnostic methods include

  • Isolation of organism
  • Serology
  • Molecular methods (PCR)
Isolation of organism

As rickettsiae are highly infectious and comes under Group 3 organisms. isolation should be in laboratories equipped with appropriate safety provisions preferably Biosafety level-3 laboratory.

Rickettsia may be isolated in male guinea pigs or mice, yolk sac of chick embryos, vero cell line or MRC 5 cell lines from patients in early phase of the disease. Rickettsia grow well in 3-5 days on vero cell and MRC 5 cell coverslip cultures and can be identified by immunofluorescence using group and strain specific monoclonal antibodies.

Serological diagnosis

Several diagnostic tests are currently available for the demonstration of significant rise in titer of antibodies in the serum of patient during the course of infection and convalescence . Tests include Weil-Felix Test (WFT), Indirect Immunofluorescence (IIF), Enzyme Linked Immunosorbent Assay (ELISA), etc. 

Weil-Felix Test : Test detects antibodies produced during Orientia tsutsugamushi infection that cross-react by agglutination with the OX-K antigen of an unrelated bacteria, Proteus mirabilis.

Indirect Immunofluorescence (IIF): Which use yolk sac propagated or cell culture derived Orientia tsutsugamushi antigens

Molecular methods

For PCR, blood sample is collected in tubes containing EDTA or sodium citrate. Organism can be demonstrated by standard and nested PCR. Recently, detection of Orientia tsutsugamushi quantitative real time PCR has been reported.

Treatment

Antibiotic therapy is the most effective measure of treatment. Tetracyclines and chloramphenicol are  used for therapy. Doxycycline in a dose of 100 mg twice daily for 7-15 days or chloramphenicol 500 mg four times a day PO for 7-15 days (for children 150 mg/kg/day for 5 days) is recommended.

Prevention and control 

Chemoprophylaxis : Should be considered for persons with anticipated intense but transient exposure to Orientia tsutsugamushi. Weekly dose of 200 mg of doxycycline can prevent infection. 

Reduction in Chigger mite: Contact with chiggers can be reduced by applying repellent to the tops of boots, socks, and trouser legs and by not sitting or lying directly on the ground. 

Scrub typhus vaccine: An effective vaccine for humans has not been developed till now, mainly due to serotypic heterogencity of the organism.

 

Thursday, July 21, 2022

DISCOVERED WORLD'S LARGEST BACTERIUM (Thiomargarita magnifica)

By definition, a microorganism or microbe is an organism of  microscopic size (they can only be seen with a microscope), which may exist as single celled form or as colonies.

But the newly described bacterium (Thiomargarita magnifica) living in Caribbean mangroves are different from known properties of microorganisms. Its threadlike single cell is visible to naked eye, growing up to 2 centimeters. This bacterium has a large genome which is not free floating inside the cell as in other bacteria, but instead encased in a membrane ( like the characteristics of complex cells).

Basically the living organisms can be divided into two broad categories: One is prokaryotes-which include bacteria and single celled organisms called Archaea and second is eukaryotes, which include either single celled or multicellular organisms that contain nucleus and other membrane bound organelles. There is a wide range of Eukaryotic organisms, including all animals, plants, fungi and protists. Prokaryotes are organisms that lacks a distinct nucleus and other organelles due to the absence of internal membranes. The newly described organism blurs the line between prokaryotes and eukaryotes.

Thiomargarita namebiensis was discoverd in Oceanic sediments off the Namibian coast in April 1997 and currently holds the world record for second largest bacterium. This microbe ranges from 100 to 300 micrometers in length with the largest reported to be 750 micrometers. In comparison, E.coli and other normal sized bacterium are an average of 2 micrometers, approximately 0.7% the size of Thimargarita namibiensis.

Like Thiomargarita namibiensis, found in Namibia, the new mangrove bacterium also has a huge sac presumably of water- that takes up 73% of its total volume. That similarity and a genetic analysis led the research team to place it in the same genus and propose calling it Thiomarita magnifica.

The genetic analysis with labelling the DNA with fluorescent tags shows the bacterial genome was so big because there are more than 500,000 copies of the same stretches of DNA. Ribosomes were also observed inside the DNA-filled sac. 






Tuesday, July 19, 2022

MARBURG VIRUS DISEASE (MVD)

Marburg virus disease formerly known as Marburg hemorrhagic fever, is a severe, often fatal illness in humans. MVD is caused by the Marburg virus, RNA virus of the Filovirus family.

Marburg was first recognized in 1967, when outbreaks of hemorrhagic fever occurred simultaneously in laboratories in Marburg and Frankfurt, Germany and in Belgrade, Serbia. The first people infected had been exposed to Ugandan imported African green monkeys or their tissues while conducting research.

The reservoir host of Marburg virus is the African fruit bat, Rousettus aegyptiacus. Fruit bats infected with virus do not show obvious symptoms. This Rousettus bat is sighted, cave-dwelling bat widely distributed across Africa.

The virus

Marburg viruses are filamentous, enveloped, single stranded, negative sense RNA viruses that belong to the family Filoviridae, genus Marburgvirus. There is only a single species Marburg marburgvirus, that include two viruses: Marburg and Ravn virus. Both viruses cause clinically indistinguishable disease.

The MARV genome encodes seven structural proteins with different role in pathogenesis. Viral RNA is associated with the nucleoprotein (NP), viral protein 30 (VP30), VP35 and the L-polymerase (L) which form the nucleocapsid. A matrix (composed of  VP40), VP 24 and lipid envelope with surface glycoprotein (GP) spikes surrounds the ribonucleoprotein. Cell and tissue tropism and virus-cell membrane fusion are determined by MARV GP. In addition, GP may play a role in immune evasion by counteracting the antiviral effects of tetherin, an antiviral interferon stimulated protein that inhibits viral spread. Function of VP40 is to suppress host cell response to IFN signaling. VP35 is virulence factor that facilitates immune evasion by impairing IFN response and is important in viral RNA synthesis. The L protein mediates genome replication and transcription.

MARV is classified as risk group 4 (RG-4) pathogen.

Transmission

Natural reservoir for the virus is R. aegyptiacus bats, but it is not clear how MARV transmission from bat to humans occurs.

  • Once an individual is infected, interhuman transmission occurs via direct contact (broken skin or mucus membranes) with the blood and other body fluids (urine, saliva, faeces, vomit, breast milk, amniotic fluid, and semen) of infected people or 
  • Indirect contact with contaminated surfaces and materials such as clothing, bedding, and medical equipment. 
  • Infection may occur in relation to the burial of infected individuals.
  • Contact with dead or living infected animals including bushmeat (eg. monkeys, chimpanzees, forest antelopes and bats) 

Filovirus can survive in liquid and dried material for many days. They are inactivated by gamma irradiations , heating for 60-75 minutes at 60 Degree Celsius or boiling for five minutes, and are sensitive to liquid solvents, sodium hypochlorite and other disinfectants.  

Clinical features

The incubation period last from 5 to 10 days (range 3-21 days), and is most likely related to the infectious dose and the route of infection. Transmission does not occur during the incubation period.

The clinical course can be divided into three phases, 

  • Generalized phase (days 1-4)
  • Early organ phase (days 5-13)
  • Late organ or convalescent phase (days 13+)
The onset of  MVD is abrupt, with non-specific, flu like symptoms such as high fever, severe headache, chills, myalgia, prostration and malaise. In 50-70 % of patients , rapid debilitation, marked by gastrointestinal symptoms such as anorexia, abdominal discomfort, severe nausea, vomiting and diarrhoea, occurs within 2-5 days. The intensity of the disease increases on days 5-7, with a maculopapular rash and symptoms of haemorrhagic fever such as petechiae, mucosal and gastrointestinal bleeding. Fresh blood in vomitus and faeces is often accompanied by bleeding from the nose, gums, and vagina. Spontaneous bleeding at venipuncture sites (where intravenous access is obtained to give fluids or obtain blood sample) is particularly troublesome. Neurological symptoms (disorientation , agitation, seizures, and coma) can occur in later stages of the disease. Joint pain , uveitis, orchitis, recurrent hepatitis, pericarditis and mental dysfunction have been documented as complications during convalescence.

Disseminated intravascular coagulation, lymphopenia and thrombocytopenia typically appear within a week after the disease onset. Patients either recover with supportive therapy or die from dehydration , internal bleeding and multiorgan failure 8-16 days after symptom onset. MVD survivors have experienced various complications including exhaustion, myalgia, hyperhidrosis, skin desquamation and hair loss.

Diagnosis

Clinical diagnosis is difficult because many of the signs and symptoms are comparable to other infectious diseases such as malaria, typhoid fever and dengue as well as other viral hemorrhagic fevers.

Diagnostic methods include;

  • Virus isolation
  • Reverse transcription polymerase chain reaction (RT-PCR)
  • Antigen detection
  • Serology and
  • Immunohistochemistry.
Virus isolation: Virus propagation in different cell lines (especially Vero cells and Vero E6).
Should be performed in a BSL-4 laboratory.

Molecular methods: (RT-PCR, nested PCR , real-time quantitative RT-PCR) targeting NP,L and GP genes are sensitive and specific.

Antigen detection: Since high virus titers are present in blood and tissues, antigen detection is suitable for diagnosis in early stages of MVD. The antigen capture ELISA targets the proteins NP, VP40 and GP.

Serology: Methods include ELISA & IFA. The recombinant proteins rGP and rNP are used for detection of MARV IgM & IgG antibodies. IgM capture ELISA has been shown to be very useful for detection MARV IgM antibodies which indicate recent infection and can be detected as early as 2-4 days after symptom onset. MARV IgG antibodies can be detected 8-10 days after symptom onset and persist up to 2 years. 

Histological technique: Antigen detection by immunohistochemistry (for post mortem diagnosis).

Treatment 

Currently there are no vaccines or antivirals treatments approved for MVD. However, supportive care-rehydration with oral or intravenous fluids- and treatment of specific symptoms improves survival.

Prevention and control

Raising awareness of risk factors for Marburg infection and protective measures that individuals can take is an effective way to reduce the human transmission.

Transmission from wildlife to people remains unclear, however avoiding fruit bats and sick non-human primates is one way to protect against infection.

Measures for prevention of secondary or person to person transmission are like those used for other hemorrhagic fevers. If a patient is either suspected or confirmed to have MVD, infection prevention and control measures should be used to prevent direct physical contact with the patient. These precautions include wearing protective gowns, gloves, and mask; placing the infected individual in strict isolation ands sterilization and proper disposal of needles, equipment's and patient excretions. 


Sunday, July 17, 2022

LONG COVID

Most people who develop COVID-19 fully recover, but current evidence suggests approximately 10-20% of people experience a variety of mild and long term effects after they recover from their initial illness. These mild and long term effects are collectively known as "Long COVID" or  post COVID-19 condition.

Post COVID-19 condition is defined as the illness that occurs in people who have a history of probable or confirmed SARS-CoV-2 infection; usually within three months from the onset of COVID-19, with symptoms and effects of post COVID-19 condition cannot be explained by an alternative diagnosis. 

Post-COVID conditions may not affect everyone the same way. People with post-COVID conditions may experience health problems from different types and combinations of symptoms happening over different lengths of time. Most patients, symptoms slowly improve with time. However, for some people, post-COVID conditions may last months, and potentially years after COVID-19 illness.

People more likely to develop Long COVID;

  • People who have experienced more severe COVID-19 illness, especially those who have hospitalized or needed intensive care
  • People who had underlying health conditions prior to COVID-19
  • People who did not get a COVID-19 vaccine
  • People who experience multisystem inflammatory syndrome during or after COVID-19 illness  

People who experience post-COVID conditions most commonly report;

General symptoms

  • Tiredness or fatigue that interfere with daily life
  • Symptoms that get worse after physical or mental effort ( known as post exertional malaise)
  • Fever

Long term Respiratory effect of COVID-19

Major symptoms of post-acute covid-19 respiratory sequelae include the following

  • Shortness of breath
  • Dry cough
  • Chest pain 
Patients who are at high risk
  • Age > 60 years
  • Smokers
  • Pre-existing respiratory diseases (eg: asthma, COPD, ILD)
  • Patients requiring oxygen therapy at home
Management of specific Post-Covid pulmonary conditions
  • Post Covid Diffuse Lung Disease : The lung parenchymal abnormalities that persist after the recovery from the acute COVID-19 illness may represent either a persistent inflammatory pathology or pulmonary fibrosis. An HRCT chest is helpful in characterizing the extent and type of abnormalities.
  • Pulmonary embolism: Therapeutic anticoagulation should be administered.
  • Pulmonary infections: Secondary bacterial pneumonia should be managed with oral/intravenous antibiotics.
  • Cough should be treated according to the underlying cause.
  • Symptoms of general ill-health: General measured should be followed by all patients including nutritious diet, regular exercise appropriate for the age and physical status, regular monitoring of important parameters (oxygen saturation). 

Post-COVID Cardiovascular Symptoms

Cardiovascular symptoms are not only occur in symptomatic COVID-19 patients but have also been reported in asymptomatic patients. Up to 20-30% of hospitalized patients with sever COVID-19 have evidence of myocardial involvement manifested by;

  • Elevated troponin levels
  • Venous thrombo-embolism
  • Heart failure
  • Arrhythmias
Signs and symptoms include;
  • Profound fatigue
  • Chest pain
  • Dyspnea
  • Palpitations

Patients with cardiovascular complications may be monitored with serial clinical, ECG, Echocardiogram evaluations during follow-up.

Post-COVID Gastrointestinal symptoms

Beside the common respiratory symptoms, some COVID-19 patients experience gastrointestinal symptoms such as 

  • ageusia
  • lack of appetite
  • nausea
  • vomiting
  • dyspepsia
  • diarrhea
  • abdominal pain and 
  • hepatitis.

Risk factors for developing post Covid GI and Liver manifestations

  • Severe disease
  • Older age
  • Gut dysbiosis due to antivirals & antibiotic use 
  • Liver injury due to COVID-19, drugs or alternative medication intake

Post COVID-19 Renal symptoms

The common kidney related complications following COVID-19 are

  • New onset Acute Kidney Injury (AKI)
  • Rapid progression of pre-existing Chronic Kidney Disease
  • Progression of CKD to end stage kidney disease (ESKD)
  • New onset glomerular disease- Proteinuria, hematuria, renal dysfunction
  • New onset hypertension or worsening of hypertension
Symptoms to suspect renal complications
  • Fatigue and unexplained weakness
  • Nocturia (frequent urination during night which disturb sleep)
  • Increased froth in urine
  • Swelling on leg
  • Increase requirements of anti-hypertensives
Common investigations for diagnosis
  • Complete blood count
  • Routine Urine analysis
  • Spot urine protein/creatinine ratio
  • serum creatinine and blood urea
  • serum Na & K
  • 24-hour urine protein
  • Ultrasound of kidneys
Post COVID Neurological complications

Common Post acute Covid-19 neurological symptoms;

  • Fatigue
  • Changes in concentration
  • Impaired memory
  • Persistent muscle weakness and myalgias
  • Headaches
  • Sleep disorders
  • Dizziness
  • Impairment in smell and taste 
Specific investigations among COVID-19 patients with neurological symptoms

  • CPK (those with muscle aches, myalgias and persistent weakness)
  • Nerve conduction studies for patients with sensory motor complaints
  • Brain MRI for patients with worsening and significant cognitive neuropsychiatric manifestations
  • EEG for patients with status epilepticus
  • Polysomnogram in patients with significant sleep dysfunction

Laboratory testing

At this time, no laboratory test can definitively distinguish post-COVID conditions from other etiologies, in part due to the heterogeneity of post-COVID conditions.

Laboratory testing should be guided by the patient history, physical examination and clinical findings.  

Basic laboratory testing for post-COVID conditions                                                 

Category

 Lab test

Blood count, electrolytes, and renal function

 Complete blood count with possible iron studies to follow, basic metabolic panel

Liver function      

 Liver function tests or complete metabolic panel

Inflammatory markers

 C-reactive protein, erythrocyte sedimentation rate, ferritin

Thyroid function 

 TSH & Free T4

Vitamin deficiencies 

 Vitamin D, vitamin B12

      

Specialized laboratory testing  for post-COVID conditions                                            

Rheumatological conditions

Antinuclear antibody, rheumatoid factor, Anti-cyclic citrullinated peptide, anti cardiolipin, and creatinine phosphokinase 

Coagulation disorders

D-dimer, fibrinogen

Myocardial injury

Troponin

Differentiate symptoms of cardiac versus pulmonary origin

B-type natriuretic peptide


Saturday, July 16, 2022

MONKEYPOX (INDIA CONFIRMS FIRST MONKEYPOX CASE IN KERALA)

Monkeypox is a rare zoonotic disease caused by infection with monkeypox virus (family of variola virus) with symptoms similar to smallpox patients, although it is clinically less severe.

Monkeypox was discovered in 1958 in colonies of monkeys kept for research. African rodents and non-human primates (like monkeys) harbor the virus and infect people. 

Human monkeypox was first identified in humans in 1970 in Congo in a 9 month old boy. Since then, most cases have been reported from rural, rainforest regions of Congo and from central and west Africa.

The virus

Monkeypox virus is a an enveloped double-stranded DNA virus that belongs to the Orthopoxvirus genus of the Poxviridae family. 

There are two different groups of monkeypox virus: the Central African (Congo Basin) group and the west African group. The Congo Basin group has caused more severe disease and was thought to be more transmissible.

Natural host

Susceptible animal species include rope squirrels, tree squirrels, Gambian pouched rats, dormice, non human primates (monkeys).

Transmission

Animal to human (zoonotic) transmission can occur from direct contact with the blood, body fluids, or cutaneous or mucosal lesions of infected animals. The natural reservoir of monkeypox has not yet been identified, though rodents are the most likely. eating inadequately cooked meat and other animal products of infected animals is a possible risk factor.

Human to human transmission can results from close contact with respiratory secretions, skin lesions of an infected person or recently contaminated objects. Transmission via droplet particles usually requires prolonged face to face contact. Transmission can also occur via the placenta from mother to fetus (congenital monkeypox) or during close contact during and after birth.

Fomite transmission: Environments can become contaminated with monkeypox viruses,  when an infectious person touches clothing, bedding, towels, objects, electronics and surfaces. Someone else who touches these items can then become infected.  

Signs and symptoms

The incubation period is usually from 6 to 13 days but can range from 5 to 21 days.

Infection can be divided into two periods:

  • The invasion period (last between 0-5 days) characterized by fever, intense headache, lymphadenopathy, back pain, myalgia and intense asthenia (lack of energy).
  • The skin eruption usually begins within 1-3 days of appearance of fever. The rash tend to be more concentrated on face and extremities. The rash evolves sequentially from macules to papules, vesicles, pustules and crusts which dry up and fall off.

Monkeypox is usually a self limited disease with symptoms lasting from 2 to 4 weeks. Severe cases occur more commonly among children and are related to the extent of virus exposure. Underlying immune deficiencies may lead to worse outcomes.

Complications may include secondary infections, bronchopneumonia, sepsis, encephalitis and infection of the cornea with ensuing loss of vision.

Diagnosis

Differential diagnosis that must be considered includes other rash illnesses such as chickenpox, measles, bacterial skin infections, scabies, syphilis, and other allergic conditions.

Lymphadenopathy during the prodromal stage of illness can be a clinical feature to distinguish monkeypox from chickenpox or smallpox.

If monkeypox is suspected, collect an appropriate sample (Samples from skin lesions, the roof or fluid from vesicles and pustules, and dry crusts, biopsy) and transported safely (lesion samples must be stored in dry, sterile tube, no viral transport media required and kept cold) to a reference laboratory with appropriate capability. Polymerase Chain Reaction (PCR) is the preferred test. 

Treatment

No specific treatment is available. Clinical care should be fully optimized to alleviate symptoms, manage complications and prevent long term sequelae. Secondary bacterial infections should be treated. 

Vaccination

Vaccination against smallpox was demonstrated 85% effective in preventing monkeypox. At the present time, the original smallpox vaccines are no longer available to the general public. 

A newer vaccine based on a modified attenuated vaccinia virus (Ankara strain) was approved for the prevention of monkeypox in 2019. This is a two dose vaccine. 

Prevention

  • Raising awareness of risk factors and educating people about the measures they can take to reduce exposure to the virus is the main prevention strategy.
  • Reduce the risk of getting monkeypox by limiting close contact with people who have suspected or confirmed monkeypox or with animals who could be infected.
  • Surveillance and rapid identification of new cases.
  • Reducing the risk of zoonotic transmission.

INDIA CONFIRMS FIRST MONKEYPOX CASE

Kerala reports India's first known lab confirmed (National Institute of Virology, Pune)  case of monkeypox. The case has been reported in a 35 year old male, who reached the state from the UAE.

The person, a Kollam native, has been isolated for treatment at the Trivandrum Government Medical College Hospital. He had first consulted a private hospital at Kollam after he developed fever and other symptoms. He himself volunteered the information that close contact of his in the UAE had been confirmed as having contracted monkeypox, he was referred to the MCH here. 


Friday, July 15, 2022

SHIGELLA

Shigellosis is an acute invasive enteric infection caused by bacteria belonging to the genus Shigella. It is clinically manifested by diarrhoea that is frequently bloody. Among the four species of Shigella, Shigella dysenteriae type 1 (Sd1) is especially important because it causes the most severe disease. Major obstacles to the control of shigellosis include the ease with which Shigella spreads from one person to person, and the rapidity with which it develops antimicrobial resistance.

The Organism

Shigella are Gram Negative, non motile bacilli belonging to the family Enterobacteriacae. The genus Shigella includes four species: S. dysentriae, S. flexneri, S. boyidii and S. sonnei, also designated as groups A, B, C and D respectively. The first three species include multiple serotypes. S. sonnei  and S. boydii usually cause relatively mild illness in which dairrhoea may be watery or bloody. 

Shigella are facultative anaerobes having both respiratory and fermentative metabolism. Catalase positive (with exceptions in Shigella dysentriae), do not utilize citrate, oxidase negative, chemoorganotrophic, ferment sugars without gas production, do not grow in KCN or produce H2S, do not decarboxylate lysine, reduce nitrate to nitrites.

Cultural characteristics

On agar medium, colonies of Shigella strains can appear smooth and glistening or rough and dry. the degree of smoothness displayed depends in large part of on the extent of polymerization of the O-antigen on the lipopolysaccharide (LPS) molecule. For S. sonnei colonies of freshly isolated strains with a smooth appearance are termed form I and are usually virulent. Form I colonies are genetically unstable and dissociate to rough appearing colonies termed form II, which lack 2-amino-deoxy-l-alturonic acid and form their LPS O repeating unit. This form variation in S. sonnei is associated with the loss of the 180-220 kilobase pairs invasion plasmid. 

Colonies on MacConkey agar are colourless due to the absence of lactose fermentation. An exception is S. sonnei which ferment lactose and forms pink colonies. Deoxycholate citrate agar (DCA) is a useful selective medium.

Growth conditions

Shigellae are aerobes and facultative anaerobes. Optimal growth temperature is about 37 Degree Celsius. They generally grow less rapidly than most strains of E.coli and other members of the family Enterobacteriaceae. The average interval between cell divisions of S. dysenteriae in milk was reported to be 23 minutes compared with 12.5 minutes for E.coli.

Plasmids

Shigellae carry a variety of plasmids. The most important is the large (180-220 kbp) invasion plasmid, which belongs to the RepFIIA family of replicons and is present in all virulent strains of Shigella. The plasmid carries genes that play an essential role in these organisms, ability to cause invasive disease. In some serotypes, plasmids carry genes involved in synthesis of the O antigen. Antibiotic resistance plasmids are also common among the Shigellae. Because of the variety of plasmids carried Shigella, plasmid profile analysis has been used widely to discriminate between strains during outbreak investigations.

Antigenic structure

The different serotypes are distinguished by antigenic determinants that reside in the O antigen, which is part of the LPS molecule. The LPS molecule consists of three parts; Lipid A, which is made up of sugars and fatty acids and anchors the LPS molecule in the outer membrane; the core, which is made up of a single sequence of heptoses and hexoses and links the Lipid A to the O antigen; and the O-antigen chain, which is composed of a repetitive sequence of hexoses and extends from the surface of the bacterium.

Pathogenicity

Shigellae are pathogens of humans and other primates. Although there have been occasional reports of infection in dogs, other animals are resistant to infection.

Shigellosis (bacillary dysentery) is transmitted orally through contaminated food and water or by direct fecal-oral spread. Studies demonstrated that ingestion of as few as 200 organisms is sufficient to cause dysentery. The incubation period is from 1 to 7 days with the symptoms commonly manifesting on day 3. Shigellosis is often (but not always) begins with a watery diarrhoea that precedes the characteristic dysentery symptoms. The diarrhoea phase probably results from the production of enterotoxin by the bacteria as they transit through the small intestine.

The lesions of bacillary dysentery are restricted to the rectum and large intestine, but in severe cases part of the terminal ileum may be affected. Shigella penetrates the epithelial cells lining the colon, multiplies within these cells, and spread from cell to cell through the mucosa. The foci of infected cells coalesce to form abscesses. Small volume bloody and mucoid stools contain dead cells along with the mucus and large numbers of bacteria. Typically, there is acute inflammation with ulceration of the epithelium, and the presence of polymorphonuclear leukocytes in the stool is consistent with the inflammatory nature of shigellosis. 

Common clinical signs include fever, severe abdominal pain and cramping. The  most severe forms of shigellosis are caused by S. dysenteriae 1,  which also produces a potent cytotoxin (shiga toxin) that has been shown to play a role in the severity of the illness it causes. Shiga toxin producing strains can cause hemolytic uremic syndrome. S. sonnei strains cause milder forms of the disease, while S. flexneri and S. boydii strains can cause either severe or mild illness. Bacillary dysentery is a self limiting disease. The organisms rarely spread deeper than the lamina propria, and bloodstream involvement is uncommon.

The hallmark of Shigella pathogenicity are induction of diarrhoea, the ability to invade eukaryotic cells, multiplication inside these cells, and spread from cell to cell. While shigellae are killed after being taken up by polymorphonuclear leukocytes, they iduce apoptosis in mcrophages and kill these cells after uptake. S. dysenteriae serotype 1 produces Shiga toxin, a potent inhibitor of eukaryotic protein synthesis. 

Shigella strains invade the intestinal mucosal surface via a pathogen-directed phagocytic process that actively involves elements of the host cytoskeleton. Unlike most other bacterial pathogens, Shigella strains rapidly lyse the endocytic vacuole upon entry and are released free into the host cell cytoplasm where they replicate. Shigellae are actively motile during growth inside the host cell. This motility is unusual in that it is not driven by bacterial flagella. Rather a bacterial protein, expressed in the outer membrane at one pole of the bacterium, catalyzes the polymerization of host cell actin filaments. Formation of actin tracks literally propels the bacterium through the cytoplasm as actin monomers polymerize into long filaments from one pole of the bacterium. 

Toxins

  1. Endotoxins : Upon autolysis, all Shigellae release their toxic lipopolysaccharide. This probably contributes to the irritation of the bowel wall.
  2. Shigella dysenteriae Exotoxin: Heat labile exotoxin that affects both the gut and the central nervous system. The B subunit of the toxin bind to a component of the cell membrane known as Gb3 and the complex enters the cell. When the protein is inside the cell, the A subunit interacts with the ribosomes to inactivate them. The A subunit of Shiga toxin is an N-glycosidase that modifies the RNA component of the ribosomes to inactivate it and so bring a halt to protein synthesis leading to the death of the cell. The vascular endothelium must continually renew itself, so this killing of cells leads to breakdown of the lining and to hemorrhage. The first response is commonly a bloody diarrhoea. This is because Shiga toxin is usually taken in with contaminated food or water. The toxin is effective against small blood vessels, such as found in the digestive tract, the kidney, and lungs. A specific target for the toxin is the vascular endothelium of the glomerulus. Destroying these structures leads to kidney failure and the development of the often deadly and frequently debilitating hemolytic uremic syndrome. 
The disease

Mode of transmission

Shigella are spread by direct contact with an infected person or by eating contaminated food or drinking contaminated water. Flies may also transmit the organism. The low infective dose, as few as 200 viable organisms, facilitates person to person spread. 

Clinical presentation

After an incubation period of one to four days, patients typically present with diarrhoea characterized by the frequent passage of small liquid stools that contain visible blood, with or without mucus. Abdominal cramps and tenesmus (unproductive, painful straining) are common. Fever and anorexia are also common but are not specific. 

Risk factors for severe disease and death

On average, severity of illness and risk of death are least with disease caused by S. sonnei and greatest with infection by Sd1. 

The disease is also most likely to be severe among,

  • Infants and adults older than 50 years
  • Children who are not breastfed
  • Children recovering from measles
  • Malnourished children and adults; and
  • Any patient who develops dehydration, unconsciousness, or hypo-or hyper thermia or has history of convulsion when first seen.

Complications


Most patients improve within 48 hours and recover fully in 7-10 days without complications. Some, however, develop metabolic abnormalities, encephalopathy, toxic megacolon, intestinal perforation, hemolytic uremic syndrome (HUS) or rectal prolapse. 

Hypokalemia, hypernatremia and hypoglycemia

These metabolic abnormalities, which may be severe, are best prevented by continued feeding during the illness and by replacing diarrhoeal losses with ORS solution. Potassium depletion and hypoglycemia may also occur when malnourished children are rehydrated intravenously with Ringer's lactate solution or normal saline, which provide little or no potassium, respectively. Severe hyponatremia (serum sodium < 120 mEq/L) should be treated by intravenous infusion of hypertonic saline solution(3%). Severe hypoglycemia (blood glucose <2.2 mmol/L) should be treated with intravenous infusion of dextrose (2.0 ml/kg of 25% glucose).

Convulsions

Children with Shigellosis may have a single brief convulsion. If, however, convulsions are prolonged or repeated, anticonvulsant treatment should be given.

Encephalopathy

Encephalopathy may be caused by recognized metabolic abnormalities, such as severe hypoglycemia, but in most cases the cause is unknown. Patients may present with stupor or coma, or with other neurological symptoms, including a history of a recent seizure.

Toxic Megacolon

Toxic megacolon develops when mucosal inflammation and ulceration occur throughout the colon causing ileus and severe colonic distension. 

Hemolytic Uremic Syndrome

HUS is a serious complication of infection with Sd1 or E.coli O157:H7; it includes hemolytic anemia, thrombocytopenia and renal failure. HUS should be suspected when patient with bloody diarrhoea has (i) little or no urine output; (ii) an elevated blood urea nitrogen or serum creatinine; (iii) abnormal bleeding; (iv) a low hematocrit and red blood cell count; and (v) fragmented red blood cells and no or few platelets on peripheral blood smear. 

Intestinal perforation

May be caused by ulceration or vasculitis that penetrates the wall of the colon. The result is peritonitis and sepsis. 

Rectal prolapse

In most cases, the rectal prolapse can be treated manually, by gently pushing the prolapsed rectum back through the anal opening using a surgical glove or a soft, warm, wet cloth.

LABORATORY DIAGNOSIS

A definitive diagnosis of Shigella infection can only be made by isolating the organism from stool and serotyping the isolate. Culture is also required to determine antimicrobial sensitivity.

Specimen collection and transport methods

Specimens that cannot be cultured within two hours of collection should be placed in transport medium and refrigerated immediately. Unlike some organisms, Shigella will die, even in transport media, if they are not refrigerated.

Transport media

The most reliable medium is Cary-Blair medium. This is a semi-solid medium useful for the preservation and transport of specimens for Shigella as well as Escherichia coli, Salmonella, Vibrio and Yersinia. Other transport media are Amies and Stuart media.

Collection of specimens

Collect a fresh stool including portions with blood and/or mucus. Place stool in leak proof sterile screw capped container. If specimen cannot reach the laboratory within two hours, place it in Cary-Blair transport medium. If patient is not able to pass stool, collect a sample with a sterile rectal swab. Place the swab in Cary-Blair transport medium and seal the tube so it cannot leak.

Identification of Shigella

Enrichment: No enrichment medium is suitable for Shigella

Direct inoculation of Agar plates: Inoculate a general purpose plating medium of low selectivity and one of moderate or high selectivity. MacConkey agar is recommended as a low selectivity. Xylose-lysine desoxycholate (XLD) agar is recommended as amedium of moderate or high selectivity for isolation Shigella. Desoxycholate citrate agar (DCA) is a suitable alternative. Use a moderate inoculum (2 or 3 loopfuls of fecal specimen). Incubate plates at 35-37 Degree Celsius for  18-24 hours. Do not use Salmonella-Shigella(SS) agar, as it often inhibits growth of Sd1.

Identification of colonies on plating media 

Colonies suspicious for Shigella will appear as follows

  • MacConkey Agar: Convex, colourless
  • XLD agar: red, smooth
  • DCA agar: colourless, translucent
Mark the bottom of the petri plate to identify well-separated colonies of typical appearance that will be transferred from each of the plating media for further testing.

Inoculation of Kligler iron agar (KIA): Pick three colonies from the plating media and inoculate into KIA. Tubes suspicious for Shigella will have an acid (yellow) butt and an alkaline (red) slant. They will not produce gas or hydrogen sulfide. Triple Sugar Iron agar can also be used for the identification of Shigella. 

Serological typing of cultures: Agglutination tests are carried out on a clean glass slide. Use a straight wire to remove a portion of the growth form the surface of the KIA slant and emulsify in a 3 mm loopful of saline. Mix thoroughly and examine carefully to ensure the suspension does not show autoagglutination. If the suspension is smooth, add one drop of antiserum, mix well and observe for agglutination over a period of 60 seconds. If the reaction is positive, interpret the agglutination test as shown below,
  • If agglutination occurs with group A, report : Shigella dysenteriae
  • Test with S. dysenteriae type 1 is positive, report : S dysenteriae type 1
  • If agglutination occurs with group B, report: Shigella flexneri
  • If agglutination occurs with group C, report: Shigella boydii
  • If agglutination occurs with group D, report: Shigella sonnei













Saturday, July 9, 2022

DENGUE FEVER

The virus aetiology of dengue fever was not documented until 1943–44, when Japanese and American scientists simultaneously isolated the viruses from soldiers in the Pacific and Asian theatres during World War II. Albert Sabin isolated dengue viruses from soldiers who became ill in Calcutta (India), New Guinea, and Hawaii. The viruses from India, Hawaii, and one strain from New Guinea were antigenically similar, whereas three others from New Guinea were different. These viruses were called dengue 1 (DENV-1) and dengue 2 (DENV-2) and designated as prototype viruses (DENV-1, Hawaii, and DENV-2, New Guinea C). The Japanese virus, isolated by Susumu Hotta, was later shown to be DENV-1. Two more serotypes, called dengue 3 (DENV-3) and dengue 4 (DENV-4), were subsequently isolated by William McD. Hammon and his colleagues from children with haemorrhagic disease during an epidemic in Manila, Philippines, in 1956. Although thousands of dengue viruses have been isolated from different parts of the world since that time, all fit antigenically into the four-serotype classification.

Many early workers suspected that dengue viruses were transmitted by mosquitoes, but actual transmission was first documented by H. Graham in 1903. In 1906, T. L. Bancroft demonstrated transmission by Aedes aegypti, later known to be the principal urban mosquito vector of dengue viruses. Subsequent studies in the Philippines, Indonesia, Japan, and the Pacific showed that Aedes albopictus and Aedes polynesiensis also were efficient secondary vectors for dengue viruses.

During and following World War II, Aedes aegypti greatly expanded its distribution in Asia, becoming the dominant day-biting mosquito in most Asian cities. Multiple dengue virus serotypes were also disseminated widely at that time. A dramatic increase in urbanization in the post-war years created ideal conditions for increased transmission of urban mosquito-borne diseases. These changes, plus an increased movement of people within and among countries of the region via airplane, resulted in increased movement of dengue viruses between population centres, increased frequency of epidemic activity, the development of hyperendemicity (co-circulation of multiple serotypes), and the emergence of epidemic dengue haemorrhagic fever/dengue shock syndrome (DHF/DSS) in many countries of Southeast Asia during the 1960s.

By 1975, DHF/DSS was a leading cause of hospitalization and death among children in the region. During the 1980s and 1990s, epidemic DHF/DSS continued to expand geographically in Asia. In the 1970s DHF/DSS moved into the Pacific Islands after an absence of 25 years. In the Americas, where Aedes aegypti had been eradicated from many countries as a result of efforts to control yellow fever, increased epidemic dengue fever closely followed the reinfestation of countries by this mosquito in the 1970s, 1980s, and 1990s.

Classification

Dengue viruses belong to the family Flaviviridae, genus Flavivirus. There are four serotypes: DENV-1, DENV-2, DENV-3, and DENV-4. They belong to a larger, heterogeneous group of viruses called arboviruses. This is an ecological classification, one which implies that transmission between vertebrate hosts, including humans, is dependent on hematophagous arthropod vectors.

As are other flaviviruses, dengue viruses are comprised of a single-stranded RNA genome surrounded by an icosahedral nucleocapsid. The latter is covered by a lipid envelope, which is derived from the host cell membrane from which the virus buds. The complete virion is about 50 nm in diameter. The mature virion contains three structural proteins as follows: the nucleocapsid core protein (C), a membrane associated protein (M), and the envelope protein (E). Functional domains responsible for virus neutralization, hemagglutination, fusion, and interaction with virus receptors are associated with the E protein. Epitope mapping has demonstrated three to four major antigenic sites. Antigenically, the four dengue viruses make up a unique complex within the genus Flavivirus. Although the four dengue serotypes are antigenically distinct, there is evidence that serologic subcomplexes may exist within the group. For example, a close genetic relationship has been demonstrated between DENV-1 and DENV-3 and between DENV-2 and DENV-4.

Host

There are only three known natural hosts for dengue viruses: Aedes mosquitoes, humans, and lower primates. Viremia in humans may last 2–12 days (average, 4–5 days) with titres ranging from undetectable to more than 108 mosquito infectious doses 50(MID50) ml. Experimental evidence shows that several species of lower primates (chimpanzees, gibbons, and macaques) become infected and develop viremia titres high enough to infect mosquitoes, but do not develop illness. Viremia levels in lower primates are more transient, often lasting only 1–2 days if detectable, with titres seldom reaching 106 MID50 ml.

Dengue viruses are known to cause clinical illness and disease only in humans.  Mosquitoes only of species of the genus Aedes appear to be natural hosts for dengue viruses. Species of the subgenus Stegomyia are the most important vectors in terms of human transmission, and include Ae. (S.) aegypti, the principal urban vector worldwide, Ae. (S.) albopictus (Asia, the Pacific, Americas, Africa, and Europe), Ae. (S.) scutellaris spp. (Pacific), and Ae. (S.) africanus, and Ae. (S.) luteocephalus (Africa).

Transmission

Most dengue virus transmission is by the bite of an infective mosquito vector. Any of the four serotypes may cause high levels of viremia in humans (≥108 MID50 ml) that lasts an average of 4–5 days (range, 2–12 days). If a competent mosquito vector takes a blood meal from a person during this viraemic phase, virus is ingested with the blood meal and infects the cells of the mosquito mesenteron. After 8–12 days, depending on ambient temperature, the virus, and the mosquito, the virus will disseminate and infect other tissues, including the mosquito salivary glands. When the mosquito takes a subsequent blood meal, virus is injected into the person along with the salivary fluids. Dengue virus infection has no apparent effect on the mosquito, which is infected for life.

Ae. aegypti is a highly competent epidemic vector of dengue viruses. It lives in close association with humans because of its preference to lay eggs in artificial water holding containers in the domestic environment, and to rest inside houses and feed on humans rather than other vertebrates. It has a nearly undetectable bite and is very restless in the sense that the slightest movement will make it interrupt feeding and fly away. It is not uncommon, therefore, to have a single mosquito bite several persons in the same room or general vicinity over a short period of time. If the mosquito is infective, all of the persons bitten may become infected.

In addition to transmitting the virus to humans or lower primates, the female mosquito may also transmit the virus vertically to her offspring through her eggs. Although the implications of vertical transmission are not fully understood, it is thought to be an important mechanism in the natural maintenance cycles of dengue viruses, especially in rural and forest settings. The primary site of replication of dengue viruses after injection into humans by the feeding mosquito is believed to be dendritic cells. Other tissues from which these viruses have been isolated include phagocytic monocytes, liver, lungs, kidneys, lymph nodes, stomach, intestine, and brain, but it is not known to what extent the virus replicates in these tissues. Pathological changes similar to those observed in yellow fever, with focal central necrosis, have been observed in the liver of some patients who died of dengue virus infection. There is some evidence that the viruses also replicate in endothelial cells and possibly in bone marrow cells. Encephalopathy has been documented in dengue infection but whether dengue viruses cross the blood–brain barrier and replicate in the central nervous system is still open to question. Dengue viruses have been transmitted by blood transfusion and organ transplantation.


Seasonality and intensity of transmission

Dengue transmission usually occurs during the rainy season when the temperature and humidity are conducive for build-up of the vector population breeding in secondary habitats as well as for longer mosquito survival.

In arid zones where rainfall is scanty during the dry season, high vector population builds up in man-made storage containers. Ambient temperature, besides hastening the life-cycle of Ae. aegypti and resulting in the production of small-size mosquitoes, also reduces the extrinsic incubation period of the virus as well. Small-size females are forced to take more blood meals to obtain the protein needed for egg production. This has the effect of increasing the number of infected individuals and hastening the build-up of the epidemic during the dry season.

A number of factors that contribute to initiation and maintenance of an epidemic include: (i) the strain of the virus, which may influence the magnitude and duration of the viraemia in humans; (ii) the density, behaviour and vectorial capacity of the vector population; (iii) the susceptibility of the human population (both genetic factors and pre-existing immune profile); and (iv) the introduction of the virus into a receptive community.

Pathogenicity

Two pathogenetic mechanisms are associated with severe dengue infection. Classical DHF/DSS is characterized by a vascular leak syndrome which, if not corrected, may rapidly lead to hypovolemia, shock, and death. The underlying pathogenetic mechanism for this syndrome is thought to be an immune enhancement phenomenon whereby the infecting virus complexes with non-neutralizing dengue antibody, thus enhancing infection of mononuclear phagocytes.

The latter produce vasoactive mediators, which are responsible for increased vascular permeability. Loss of plasma from the vascular compartment may range from mild and transient to severe and prolonged, the latter often resulting in irreversible shock and death. Although classical DSS is most commonly associated with secondary dengue infections, it has also been documented in primary infections, which suggest that sub neutralizing levels of homologous antibody or other immune factors may also cause immune enhancement.

The most consistent feature associated with the emergence of DHF/DSS in an area is the development of hyperendemicity. This increases the probability of secondary infection, which is thought to be associated with DHF/DSS. However, hyperendemicity is also associated with increased transmission and movement of viruses between population centres, which increases the probability of genetic change and introduction of virus strains that have greater epidemic potential or virulence.

Patients infected with dengue viruses may also experience severe and uncontrolled bleeding, usually from the upper gastrointestinal (GI) tract. This severe haemorrhagic disease may be associated with multiple organ failure, and is more difficult to manage than classical DHF/DSS. The underlying pathogenetic mechanism for this type of bleeding is clearly different from that of the vascular leak syndrome, and involves disseminated intravascular coagulation and thrombocytopenia.

A third type of severe and fatal dengue infection, which may or may not involve overt haemorrhagic disease, is encephalopathy. Although many patients with this syndrome present clinically as viral encephalitis, conclusive evidence that dengue viruses infect the central nervous system has not yet been documented. Available data suggest that neurologic symptoms may be secondary to cerebral haemorrhage, oedema, or other indirect effects of dengue virus infection.

Clinical features

Dengue virus infection may be asymptomatic or may cause undifferentiated febrile illness (viral syndrome), dengue fever (DF), or dengue haemorrhagic fever (DHF) including dengue shock syndrome (DSS). Infection with one dengue serotype gives lifelong immunity to that particular serotype, but there is only short-term cross-protection for the other serotypes. The clinical manifestation depends on the virus strain and host factors such as age, immune status, etc.


The incubation period may be as short as 3 days and as long as 14 days, but most often is 4–7 days. The majority of patients present with mild, nonspecific febrile illness, or with classical dengue fever. The latter is generally observed in older children and adults, and is characterized by sudden onset of fever, frontal headache, retroocular pain, and myalgias. Rash, joint pains, nausea and vomiting, and lymphadenopathy are common. The acute illness, which lasts for 3–7 days, is usually benign and self-limiting, but it can be very debilitating, and convalescence may be prolonged for several weeks.


Undifferentiated fever

Infants, children and adults who have been infected with dengue virus, especially for the first time (i.e. primary dengue infection), may develop a simple fever indistinguishable from other viral infections. Maculopapular rashes may accompany the fever or may appear during defervescence. Upper respiratory and gastrointestinal symptoms are common.

Dengue fever

Dengue fever (DF) is most common in older children, adolescents and adults. It is generally an acute febrile illness, and sometimes biphasic fever with severe headache, myalgias, arthralgias, rashes, leucopenia and thrombocytopenia may also be observed. Although DF may be benign, it could be an incapacitating disease with severe headache, muscle and joint and bone pains (break-bone fever), particularly in adults. Occasionally unusual haemorrhage such as gastrointestinal bleeding, hypermenorrhoea and massive epistaxis occur. In dengue endemic areas, outbreaks of DF seldom occur among local people.

After an average intrinsic incubation period of 4–6 days (range 3–14 days), various non-specific, constitutional symptoms and headache, backache and general malaise may develop. Typically, the onset of DF is sudden with a sharp rise in temperature and is frequently associated with a flushed face and headache. Occasionally, chills accompany the sudden rise in temperature. Thereafter, there may be retro-orbital pain on eye movement or eye pressure, photophobia, backache, and pain in the muscles and joints/bones. The other common symptoms include anorexia and altered taste sensation, constipation, colicky pain and abdominal tenderness, dragging pains in the inguinal region, sore throat and general depression. These symptoms usually persist from several days to a few weeks. It is noteworthy that these symptoms and signs of DF vary markedly in frequency and severity.

  • Fever: The body temperature is usually between 39 °C and 40 °C, and the fever may be biphasic, lasting 5–7 days in the majority of cases.
  • Rash: Diffuse flushing or fleeting eruptions may be observed on the face, neck and chest during the first two to three days, and a conspicuous rash that may be maculopapular or rubelliform appears on approximately the third or fourth day. Towards the end of the febrile period or immediately after defervescence, the generalized rash fades and localized clusters of petechiae may appear over the dorsum of the feet, on the legs, and on the hands and arms. This convalescent rash is characterized by confluent petechiae surrounding scattered pale, round areas of normal skin. Skin itching may be observed.
  • Haemorrhagic manifestations: Skin haemorrhage may be present as a positive tourniquet test and/or petechiae. Other bleeding such as massive epistaxis, hypermenorrhoea and gastrointestinal bleeding rarely occur in DF, complicated with thrombocytopenia.
  • Course: The relative duration and severity of DF illness varies between individuals in a given epidemic, as well as from one epidemic to another. Convalescence may be short and uneventful but may also often be prolonged. In adults, it sometimes lasts for several weeks and may be accompanied by pronounced asthenia and depression. Bradycardia is common during convalescence. Haemorrhagic complications, such as epistaxis, gingival bleeding, gastrointestinal bleeding, haematuria and hypermenorrhoea, are unusual in DF. Although rare, such severe bleeding (DF with unusual haemorrhage) is an important cause of death in DF.

Dengue fever with haemorrhagic manifestations must be differentiated from dengue haemorrhagic fever.

Clinical laboratory findings

In dengue endemic areas, positive tourniquet test and leukopenia (WBC ≤ 5000 cells/mm3) help in making early diagnosis of dengue infection with a positive predictive value of 70%–80%.

The laboratory findings during an acute DF episode of illness are as follows:

  • Total WBC is usually normal at the onset of fever; then leucopenia develops with decreasing neutrophils and lasts throughout the febrile period.
  • Platelet counts are usually normal, as are other components of the blood clotting mechanism. Mild thrombocytopenia (100000 to 150000 cells/mm3) is common and about half of all DF patients have platelet count below 100000 cells/mm3; but severe thrombocytopenia (<50000 cells/mm3) is rare.
  • Mild haematocrit rise (≈10%) may be found as a consequence of dehydration associated with high fever, vomiting, anorexia and poor oral intake.
  • Serum biochemistry is usually normal but liver enzymes and aspartate amino transferase (AST) levels may be elevated.

Dengue haemorrhagic fever and dengue shock syndrome

Dengue haemorrhagic fever (DHF) is more common in children less than 15 years of age in hyperendemic areas, in association with repeated dengue infections. However, the incidence of DHF in adults is increasing. DHF is characterized by the acute onset of high fever and is associated with signs and symptoms similar to DF in the early febrile phase. There are common haemorrhagic diatheses such as positive tourniquet test (TT), petechiae, easy bruising and/or GI haemorrhage in severe cases. By the end of the febrile phase, there is a tendency to develop hypovolemic shock (dengue shock syndrome) due to plasma leakage.

The presence of preceding warning signs such as persistent vomiting, abdominal pain, lethargy or restlessness, or irritability and oliguria are important for intervention to prevent shock. Abnormal haemostasis and plasma leakage are the main pathophysiological hallmarks of DHF. Thrombocytopenia and rising haematocrit/haemoconcentration are constant findings before the subsidence of fever/ onset of shock. DHF occurs most commonly in children with secondary dengue infection. It has also been documented in primary infections with DENV-1 and DENV-3 as well as in infants.

Typical cases of DHF are characterized by high fever, haemorrhagic phenomena, hepatomegaly, and often circulatory disturbance and shock. Moderate to marked thrombocytopenia with concurrent haemoconcentration/rising haematocrit are constant and distinctive laboratory findings are seen. The major pathophysiological changes that determine the severity of DHF and differentiate it from DF and other viral haemorrhagic fevers are abnormal haemostasis and leakage of plasma selectively in pleural and abdominal cavities.

The clinical course of DHF begins with a sudden rise in temperature accompanied by facial flush and other symptoms resembling dengue fever, such as anorexia, vomiting, headache, and muscle or joint pains. Some DHF patients complain of sore throat and an injected pharynx may be found on examination. Epigastric discomfort, tenderness at the right sub-costal margin, and generalized abdominal pain are common. The temperature is typically high and, in most cases, continues as such for 2–7 days before falling to a normal or subnormal level. Occasionally the temperature may be as high as 40 °C, and febrile convulsions may occur. A bi-phasic fever pattern may be observed.

The haemorrhagic form of disease, DHF/DSS, is most commonly observed in children under the age of 15 years, but it also occurs in adults in areas of lower endemicity. It is characterized by acute onset of fever and a variety of nonspecific signs and symptoms that may last 2–7 days. During this stage of illness, DHF/DSS is difficult to distinguish from many other viral, bacterial, and protozoal infections. In children, upper respiratory symptoms caused by concurrent infection with other viruses or bacteria are not uncommon. The differential diagnosis should include other haemorrhagic fevers, hepatitis, leptospirosis, typhoid, malaria, measles, influenza, etc.

The critical stage in DHF/DSS occurs when the fever subsides to or below normal. At that time, the patient’s condition may deteriorate rapidly with signs of circulatory failure, neurologic manifestations, shock and death if proper management is not implemented. Skin haemorrhages such as petechiae, easy bruising, bleeding at the sites of venepuncture, and purpura/ecchymoses are the most common haemorrhagic manifestations; GI haemorrhage may occur, usually after, but in some cases before, onset of shock.

A positive tourniquet test (≥10 spots/square inch), the most common haemorrhagic phenomenon, could be observed in the early febrile phase. Easy bruising and bleeding at venipuncture sites are present in most cases. Fine petechiae scattered on the extremities, axillae, and face and soft palate may be seen during the early febrile phase. A confluent petechial rash with small, round areas of normal skin is seen in convalescence, as in dengue fever. A maculopapular or rubelliform rash may be observed early or late in the disease. Epistaxis and gum bleeding are less common. Mild gastrointestinal haemorrhage is occasionally observed, however, this could be severe in pre-existing peptic ulcer disease. Haematuria is rare. The liver is usually palpable early in the febrile phase, varying from just palpable to 2–4 cm below the right costal margin. Liver size is not correlated with disease severity, but hepatomegaly is more frequent in shock cases. The liver is tender, but jaundice is not usually observed. It should be noted that the incidence of hepatomegaly is observer dependent. Splenomegaly has been observed in infants under twelve months and by radiology examination. A lateral decubitus chest X-ray demonstrating pleural effusion, mostly on the right side, is a constant finding. The extent of pleural effusion is positively correlated with disease severity. Ultrasound could be used to detect pleural effusion and ascites. Gall bladder oedema has been found to precede plasma leakage. The critical phase of DHF, i.e. the period of plasma leakage, begins around the transition from the febrile to the afebrile phase. Evidence of plasma leakage, pleural effusion and ascites may, however, not be detectable by physical examination in the early phase of plasma leakage or mild cases of DHF. A rising haematocrit, e.g. 10% to 15% above baseline, is the earliest evidence. Significant loss of plasma leads to hypovolemic shock. Even in these shock cases, prior to intravenous fluid therapy, pleural effusion and ascites may not be detected clinically. Plasma leakage will be detected as the disease progresses or after fluid therapy. Radiographic and ultrasound evidence of plasma leakage precedes clinical detection. A right lateral decubitus chest radiograph increases the sensitivity to detect pleural effusion. Gall bladder wall oedema is associated with plasma leakage and may precede the clinical detection. A significantly decreased serum albumin >0.5 gm/dl from baseline or <3.5 gm% is indirect evidence of plasma leakage.

In mild cases of DHF, all signs and symptoms abate after the fever subsides. Fever lysis may be accompanied by sweating and mild changes in pulse rate and blood pressure. These changes reflect mild and transient circulatory disturbances as a result of mild degrees of plasma leakage. Patients usually recover either spontaneously or after fluid and electrolyte therapy. In moderate to severe cases, the patient’s condition deteriorates a few days after the onset of fever. There are warning signs such as persistent vomiting, abdominal pain, refusal of oral intake, lethargy or restlessness or irritability, postural hypotension and oliguria. Near the end of the febrile phase, by the time or shortly after the temperature drops or between 3–7 days after the fever onset, there are signs of circulatory failure: the skin becomes cool, blotchy and congested, circum-oral cyanosis is frequently observed, and the pulse becomes weak and rapid. Although some patients may appear lethargic, usually they become restless and then rapidly go into a critical stage of shock. Acute abdominal pain is a frequent complaint before the onset of shock. The shock is characterized by a rapid and weak pulse with narrowing of the pulse pressure ≤20 mmHg with an increased diastolic pressure, e.g. 100/90 mmHg, or hypotension. Signs of reduced tissue perfusion are: delayed capillary refill (>3 seconds), cold clammy skin and restlessness. Patients in shock are in danger of dying if no prompt and appropriate treatment is given. Patients may pass into a stage of profound shock with blood pressure and/or pulse becoming imperceptible (Grade 4 DHF). It is noteworthy that most patients remain conscious almost to the terminal stage. Shock is reversible and of short duration if timely and adequate treatment with volume-replacement is given.

Without treatment, the patient may die within 12 to 24 hours. Patients with prolonged or uncorrected shock may give rise to a more complicated course with metabolic acidosis and electrolyte imbalance, multiorgan failure and severe bleeding from various organs. Hepatic and renal failure are commonly observed in prolonged shock. Encephalopathy may occur in association with multiorgan failure, metabolic and electrolyte disturbances. Intracranial haemorrhage is rare and may be a late event. Patients with prolonged or uncorrected shock have a poor prognosis and high mortality.

Pathogenesis and pathophysiology

DHF occurs in a small proportion of dengue patients. Although DHF may occur in patients experiencing dengue virus infection for the first time, most DHF cases occur in patients with a secondary infection.The association between occurrence of DHF/DSS and secondary dengue infections implicates the immune system in the pathogenesis of DHF. Both the innate immunity such as the complement system and NK cells as well as the adaptive immunity including humoral and cell mediated immunity are involved in this process. Enhancement of immune activation, particularly during a secondary infection, leads to exaggerated cytokine response resulting in changes in vascular permeability. In addition, viral products such as NS1 may play a role in regulating complement activation and vascular permeability.

The hallmark of DHF is the increased vascular permeability resulting in plasma leakage, contracted intravascular volume, and shock in severe cases. The leakage is unique in that there is selective leakage of plasma in the pleural and peritoneal cavities and the period of leakage is short (24–48 hours). Rapid recovery of shock without sequelae and the absence of inflammation in the pleura and peritoneum indicate functional changes in vascular integrity rather than structural damage of the endothelium as the underlying mechanism.

Various cytokines with permeability enhancing effect have been implicated in the pathogenesis of DHF. However, the relative importance of these cytokines in DHF is still unknown. Studies have shown that the pattern of cytokine response may be related to the pattern of cross-recognition of dengue-specific T-cells. Cross-reactive T-cells appear to be functionally deficit in their cytolytic activity but express enhanced cytokine production including TNF-a, IFN-g and chemokines.

Of note, TNF-a has been implicated in some severe manifestations including haemorrhage in some animal models. Increase in vascular permeability can also be mediated by the activation of the complement system. Elevated levels of complement fragments have been documented in DHF.

Some complement fragments such as C3a and C5a are known to have permeability enhancing effects. In recent studies, the NS1 antigen of dengue virus has been shown to regulate complement activation and may play a role in the pathogenesis of DHF.

Higher levels of viral load in DHF patients in comparison with DF patients have been demonstrated in many studies. The levels of viral protein, NS1, were also higher in DHF patients. The degrees of viral load correlate with measurements of disease severity such as the amount of pleural effusions and thrombocytopenia, suggesting that viral burden may be a key determinant of disease severity.

Clinical laboratory findings of DHF

  • The white blood cell (WBC) count may be normal or with predominant neutrophils in the early febrile phase. Thereafter, there is a drop in the total number of white blood cells and neutrophils, reaching a nadir towards the end of the febrile phase. The change in total white cell count (≤5000 cells/mm3)63 and ratio of neutrophils to lymphocyte (neutrophils<lymphocytes) is useful to predict the critical period of plasma leakage. This finding precedes thrombocytopenia or rising haematocrit. A relative lymphocytosis with increased atypical lymphocytes is commonly observed by the end of the febrile phase and into convalescence. These changes are also seen in DF.
  • The platelet counts are normal during the early febrile phase. A mild decrease could be observed thereafter. A sudden drop in platelet count to below 100 000 occurs by the end of the febrile phase before the onset of shock or subsidence of fever. The level of platelet count is correlated with severity of DHF. In addition, there is impairment of platelet function. These changes are of short duration and return to normal during convalescence.
  • The haematocrit is normal in the early febrile phase. A slight increase may be due to high fever, anorexia and vomiting. A sudden rise in haematocrit is observed simultaneously or shortly after the drop in platelet count. Haemoconcentration or rising haematocrit by 20% from the baseline, e.g. from haematocrit of 35% to ≥42% is objective evidence of leakage of plasma.
  • Thrombocytopenia and haemoconcentration are constant findings in DHF. A drop in platelet count to below 100000 cells/mm3 is usually found between the 3rd and 10th days of illness. A rise in haematocrit occurs in all DHF cases, particularly in shock cases. Haemoconcentration with haematocrit increases by 20% or more is objective evidence of plasma leakage. It should be noted that the level of haematocrit may be affected by early volume replacement and by bleeding.
  • Other common findings are hypoproteinaemia/albuminemia (as a consequence of plasma leakage), hyponatremia, and mildly elevated serum aspartate aminotransferase levels (≤200 U/L) with the ratio of AST:ALT>2.
  • A transient mild albuminuria is sometimes observed.
  • Occult blood is often found in the stool.
  • In most cases, assays of coagulation and fibrinolytic factors show reductions in fibrinogen, prothrombin, factor VIII, factor XII, and antithrombin III. A reduction in antiplasmin (plasmin inhibitor) has been noted in some cases. In severe cases with marked liver dysfunction, reduction is observed in the vitamin K-dependent prothrombin co-factors, such as factors V, VII, IX and X.
  • Partial thromboplastin time and prothrombin time are prolonged in about half and one third of DHF cases respectively. Thrombin time is also prolonged in severe cases.
  • Hyponatremia is frequently observed in DHF and is more severe in shock.
  • Hypocalcemia (corrected for hypoalbuminemia) has been observed in all cases of DHF, the level is lower in Grade 3 and 4.
  • Metabolic acidosis is frequently found in cases with prolonged shock. Blood urea nitrogen is elevated in prolonged shock.

The World Health Organization (WHO) has defined strict criteria for diagnosis of DHF/DSS, with four major clinical manifestations: high fever, haemorrhagic manifestations, haemoconcentration, and circulatory failure. WHO has classified DHF/DSS into four grades according to severity of illness: grades I and II represent the milder form of DHF and grades III and IV represent the more severe form, DSS. Thrombocytopenia and haemoconcentration are constant features. However, there is some disagreement with the WHO case definition in that some patients may present with severe and uncontrollable upper GI bleeding with shock and death in the absence of haemoconcentration or other evidence of the vascular leak syndrome. These patients by the WHO criteria cannot be categorized as having DHF/DSS. In addition, hepatomegaly may not be a constant feature in all epidemics of DHF/DSS. The WHO is currently re-evaluating the case definitions for dengue fever, DHF and DSS.

LABORATORY DIAGNOSIS

Efficient and accurate diagnosis of dengue is of primary importance for clinical care (i.e., early detection of severe cases, case confirmation and differential diagnosis with other infectious diseases), surveillance activities and outbreak control.

Laboratory diagnosis methods for confirming dengue virus infection may involve detection of the virus, viral nucleic acid, antigens or antibodies, or a combination of these techniques. After the onset of illness, the virus can be detected in serum, plasma, circulating blood cells and other tissues for 4–5 days. During the early stages of the disease, virus isolation, nucleic acid or antigen detection can be used to diagnose the infection. At the end of the acute phase of infection, serology is the method of choice for diagnosis.

The following laboratory tests are available to diagnose dengue fever and DHF:

  • Virus isolation- serotypic/genotypic characterization
  • Viral nucleic acid detection
  • Viral antigen detection
  • Immunological response-based tests-IgM and IgG antibody assays
  • Analysis for haematological parameters

Patients with symptoms consistent with dengue can be tested with both molecular and serologic diagnostic tests during the first 7 days of illness. After the first 7 days of illness, test only with serologic diagnostic tests.

Diagnostic Test

≤ 7 Days After Symptom Onset

> 7 Days Post Symptom Onset

Specimen Types

Molecular Tests

ü   

_

Serum, plasma, whole blood, cerebrospinal fluid*

Dengue Virus Antigen Detection (NS1)

ü   

_

Serum

Serologic Tests

ü   

ü   

Serum,

cerebrospinal fluid*

Tissue Tests

ü   

ü   

Fixed tissue

* Testing cerebrospinal fluid is recommended in suspect patients with central nervous system clinical manifestations such as encephalopathy and aseptic meningitis.

Acute Phase: Initial 1-7 days after symptom onset

  • The initial 1-7 days after symptom onset are referred to as the acute phase of dengue.
  • During this period, dengue virus is typically present in blood or blood-derived fluids such as serum or plasma.
  • Dengue virus RNA can be detected with molecular tests.
  • The non-structural protein NS1 is a dengue virus protein that also can be detected using some commercial tests.
  • A negative result from a molecular or NS1 test is not conclusive. For symptomatic patients during the first 1-7 days of illness, any serum sample should be tested by a NAAT or NS1 test and an IgM antibody test. Performing both molecular and IgM antibody (or NS1 and IgM antibody) tests can detect more cases than performing just one test during this time period, and usually allows diagnosis with a single sample.

Convalescent Phase: >7 days post symptom onset

  • The period beyond 7 days following symptom onset is referred to as the convalescent phase of dengue.
  • Patients with negative NAAT or NS1 test results and negative IgM antibody tests from the first 7 days of illness should have a convalescent sample tested for IgM antibody test.
  • During the convalescent phase, IgM antibodies are usually present and can be reliably detected by an IgM antibody test.
  • IgM antibodies against dengue virus can remain detectable for 3 months or longer after infection.
  • Patients who have IgM antibodies against dengue virus detected in their serum specimen with an IgM antibody test and either: 1) have a negative NAAT or NS1 result in the acute phase specimen, or 2) without an acute phase specimen, are classified as having a presumptive, recent dengue virus infection.

Testing to differentiate dengue from other flaviviruses

Special considerations:

  • Cross reactivity: Cross reactivity is a limitation of dengue serologic tests. Serologic tests to detect antibodies against other flaviviruses such Japanese encephalitis, St. Louis encephalitis, West Nile, yellow fever, and Zika viruses may cross react with dengue viruses. This limitation must be considered for patients who live in or have traveled to areas where other flaviviruses co-circulate. Therefore, a patient with other recent or past flavivirus infection(s) may be positive when tested to detect IgM antibodies against dengue virus. To more precisely determine the cause of infection in IgM positive patients, the IgM-positive specimens can be tested for specific neutralizing antibodies by plaque reduction neutralization test (PRNT) (against the four dengue virus serotypes and other flaviviruses; however, PRNT does not always conclusively distinguish specific flaviviruses.
  • Areas with co-circulating flaviviruses: For people living in or traveling to an area with endemic or concurrently circulating dengue, Zika, and other flaviviruses, clinicians will need to order appropriate tests to best differentiate dengue virus from other flaviviruses, and may consult with state or local public health laboratories or CDC for guidance.
  • Pregnant women: If the patient is pregnant and symptomatic and lives in or has travelled to an area with risk of Zikatest for Zika using NAAT in addition to dengue.

Current dengue diagnostic methods

Virus isolation

Specimens for virus isolation should be collected early in the course of the infection, during the period of viraemia (usually before day 5). Virus may be recovered from serum, plasma and peripheral blood mononuclear cells and attempts may be made from tissues collected at autopsy (e.g. liver, lung, lymph nodes, thymus, bone marrow). Because dengue virus is heat-labile, specimens awaiting transport to the laboratory should be kept in a refrigerator or packed in wet ice. For storage up to 24 hours, specimens should be kept at between +4 °C and +8 °C. For longer storage, specimens should be frozen at -70 °C in a deep-freezer or stored in a liquid nitrogen container. Storage even for short periods at –20 °C is not recommended.

Cell culture is the most widely used method for dengue virus isolation. The mosquito cell line C6/36 (cloned from Ae. albopictus) or AP61 (cell line from Ae. pseudoscutellaris) are the host cells of choice for routine isolation of dengue virus. Since not all wild type dengue viruses induce a cytopathic effect in mosquito cell lines, cell cultures must be screened for specific evidence of infection by an antigen detection immunofluorescence assay using serotype-specific monoclonal antibodies and flavivirus group-reactive or dengue complex-reactive monoclonal antibodies. Several mammalian cell cultures, such as Vero, LLCMK2, and BHK21, may also be used but are less efficient. Virus isolation followed by an immunofluorescence assay for confirmation generally requires 1–2 weeks and is possible only if the specimen is properly transported and stored to preserve the viability of the virus in it.

Nucleic acid detection

RNA is heat-labile and therefore specimens for nucleic acid detection must be handled and stored according to the procedures described for virus isolation.

RT-PCR

Compared to virus isolation, the sensitivity of the RT-PCR methods varies from 80% to 100% and depends on the region of the genome targeted by the primers, the approach used to amplify or detect the PCR products (e.g. one-step RT-PCR versus two-step RTPCR), and the method employed for subtyping (e.g. nested PCR, blot hybridization with specific DNA probes, restriction site-specific PCR, sequence analysis, etc.). To avoid false positive results due to non-specific amplification, it is important to target regions of the genome that are specific to dengue and not conserved among flavi- or other related viruses. False-positive results may also occur as a result of contamination by amplicons from previous amplifications.

Real-time RT-PCR

The real-time RT-PCR assay is a one-step assay system used to quantitate viral RNA and using primer pairs and probes that are specific to each dengue serotype. The use of a fluorescent probe enables the detection of the reaction products in real time, in a specialized PCR machine, without the need for electrophoresis. Many real-time RT-PCR assays have been developed employing TaqMan or SYBR Green technologies. The TaqMan real-time PCR is highly specific due to the sequence-specific hybridization of the probe. Nevertheless, primers and probes reported in publications may not be able to detect all dengue virus strains: the sensitivity of the primers and probes depends on their homology with the targeted gene sequence of the particular virus analysed.

Real-time RT-PCR assays are either “singleplex” (i.e. detecting only one serotype at a time) or “multiplex” (i.e. able to identify all four serotypes from a single sample). The multiplex assays have the advantage that a single reaction can determine all four serotypes without the potential for introduction of contamination during manipulation of the sample. However, the multiplex real-time RT-PCR assays, although faster, are currently less sensitive than nested RT-PCR assays. An advantage of this method is the ability to determine viral titre in a clinical sample, which may be used to study the pathogenesis of dengue disease.

Isothermal amplification methods

The NASBA (nucleic acid sequence-based amplification) assay is an isothermal RNA specific amplification assay that does not require thermal cycling instrumentation. The initial stage is a reverse transcription in which the single-stranded RNA target is copied into a double-stranded DNA molecule that serves as a template for RNA transcription. Detection of the amplified RNA is accomplished either by electrochemiluminescence or in real-time with fluorescent-labelled molecular beacon probes. NASBA has been adapted to dengue virus detection with sensitivity near that of virus isolation in cell cultures and may be a useful method for studying dengue infections in field studies.

Detection of antigens

Until recently, detection of dengue antigens in acute-phase serum was rare in patients with secondary infections because such patients had pre-existing virus-IgG antibody immunocomplexes. New developments in ELISA and dot blot assays directed to the envelop/membrane (E/M) antigen and the non-structural protein 1 (NS1) demonstrated that high concentrations of these antigens in the form of immune complexes could be detected in patients with both primary and secondary dengue infections up to nine days after the onset of illness.

The NS1 glycoprotein is produced by all flaviviruses and is secreted from mammalian cells. NS1 produces a very strong humoral response. Many studies have been directed at using the detection of NS1 to make an early diagnosis of dengue virus infection. Commercial kits for the detection of NS1 antigen are now available, though they do not differentiate between dengue serotypes.

Serological tests

MAC-ELISA

For the IgM antibody-capture enzyme-linked immunosorbent assay (MAC-ELISA) total IgM in patients’ sera is captured by anti-μ chain specific antibodies (specific to human IgM) coated onto a microplate. Dengue-specific antigens, from one to four serotypes (DEN-1, -2, -3, and -4), are bound to the captured anti-dengue IgM antibodies and are detected by monoclonal or polyclonal dengue antibodies directly or indirectly conjugated with an enzyme that will transform a non-coloured substrate into coloured products. The optical density is measured by spectrophotometer.

For detection of IgM, samples are taken within the appropriate time frame (five days or more after the onset of fever). Most of the antigens used for this assay are derived from the dengue virus envelope protein (usually virus-infected cell culture supernatants or suckling mouse brain preparations). MAC-ELISA has good sensitivity and specificity but only when used five or more days after the onset of fever. Different commercial kits (ELISA or rapid tests) are available but have variable sensitivity and specificity.

IgG ELISA

The IgG ELISA is used for the detection of recent or past dengue infections (if paired sera are collected within the correct time frame). This assay uses the same antigens as the MAC-ELISA. The use of E/M-specific capture IgG ELISA (GAC) allows detection of IgG antibodies over a period of 10 months after the infection. IgG antibodies are lifelong as measured by E/M antigen-coated indirect IgG ELISA, but a fourfold or greater increase in IgG antibodies in acute and convalescent paired sera can be used to document recent infections.

Haemagglutination-inhibition test

The haemagglutination-inhibition (HI) test (see Figure 4.4) is based on the ability of dengue antigens to agglutinate red blood cells (RBC) of ganders or trypsinized human “O” RBC. Anti-dengue antibodies in sera can inhibit this agglutination and the potency of this inhibition is measured in an HI test. Serum samples are treated with acetone or kaolin to remove non-specific inhibitors of haemagglutination, and then adsorbed with gander or trypsinized type “O” human RBC to remove non-specific agglutinins. Each batch of antigens and RBC is optimized. PH optima of each dengue haemagglutinin requires the use of multiple different pH buffers for each serotype. Optimally the HI test requires paired sera obtained upon hospital admission (acute) and discharge (convalescent) or paired sera with an interval of more than seven days. The assay does not discriminate between infections by closely related flaviviruses (e.g., between dengue virus and Japanese encephalitis virus or West Nile virus) nor between immunoglobulin isotypes.

Haematological tests

Platelets and haematocrit values are commonly measured during the acute stages of dengue infection.

A drop of the platelet counts below 100 000 per μL may be observed in dengue fever but it is a constant feature of dengue haemorrhagic fever. Thrombocytopaenia is usually observed in the period between day 3 and day 8 following the onset of illness.

Haemoconcentration, as estimated by an increase in haematocrit of 20% or more compared with convalescent values, is suggestive of hypovolaemia due to vascular permeability and plasma leakage.

Prevention and Control of Dengue

Currently, the only way to prevent dengue infection is to control the mosquito vector that transmits the virus. Unfortunately, our ability to control Ae. aegypti is limited. For more than 25 years, the recommended method of control was the use of ultralow volume (ULV) application of insecticides to kill adult mosquitoes. Field trials showed that this method was not effective in significantly reducing natural mosquito populations for any length of time. This supports epidemiologic observations that ULV has little or no impact on epidemic transmission of dengue viruses.

The only truly effective method of controlling Ae. aegypti is larval control, that is to eliminate or control the larval habitats where the mosquitoes lay their eggs. Most important larval habitats are found in the domestic environment, where most transmission occurs. To have sustainability of prevention and control programs, some responsibility for mosquito control should be transferred from government to citizen homeowners. For long-term sustainability, mosquito control programs must be community-based and integrated. Persons living in Ae. Aegypti infested communities have to be educated to accept responsibility for their own health destiny by helping government agencies control the vector mosquitoes, and thus prevent epidemic DF/DHF/DSS.


MONOCLONAL ANTIBODIES

Antigens, by their nature as macromolecules having primary, secondary, tertiary, and quaternary structures, constitute a “mosaic” of antigen...